Publications

Our experts regularly publish academic articles in a range of respected national and international publications.

2018

Baker, C., Holden, M., Plein, M., McCarthy, M., Possingham, H. (2018). Informing network management using fuzzy cognitive maps. Biological Conservation. 224: 122-128.

Beutel, T., Corbet, D., Hoffmann, M., Buck, S., Kienzle, M. (2018). Quantifying leucaena cultivation extent on grazing land. The Rangeland Journal. 40: 31-38.

Biggs, D., Smith, R.J., Adams, V.M., Brink, H., Cook, C.N., Cooney, R., Holden, M.H., Maron, M., Phelps, Possingham, H.P., Redford, K.H., Scholes, R.J., Sutherland, W.J., Underwood, F.M., Milner-Gulland, E.J. (2018). Ivory crisis: Role of bioprinting technology. Response. Science. 6386: 277-278

Bohner, M., Dannan, F., Streipert, A. (2018) A nonautonomous Beverton–Holt equation of higher order. Journal of Mathematical Analysis and Applications. 457(1): 114-133

Boss, E., Waite, A., Muller-Karger, F., Yamazaki, H., Wanninkhof, R., Sosik, H., Sloyan, B., Richardson, A., Miloslavich, P., Karstensen, J., Gregori, G., Fennel, K., Claustre, H., Cornejo, M., Berman-Frank, I., Batten, S., Acinas, S. (in press, 2/4/2018). Beyond chlorophyll fluorescence: The time is right to expand biological measurements in ocean observing programs. Limnology and Oceanography Bulletin

Brackowski, A., Holden, M., O'Bryan, C., Choi, C-Y., Gan, X., Beesley, N., Gao, Y., Allan, J., Tyrell, P., Stiles, D., Brehony, P., Meney, R., Brink, H., Takashina, N., Lin, M-C., Lin, H-Y., Rust, N., Salmo, S.G., Watson, J.E.M., Kahumbu, P., Maron, M., Possingham, H.P. (2018). Reach and messages of the world's largest ivory burn. Conservation Biology

Brito-Morales, I., Molinos, J.G., Schoeman, D.S., Burrows, M.T., Poloczanska, E.S., Brown, C.J., Ferrier, S., Harwood, T.D., Klein, C.J., McDonald-Madden, E., Moore, P.J., Pandolfi, J.M., Watson, J.E., Wenger, A.S., Richardson, A.J.(in press, 27/3/2018). Climate velocity can inform conservation in a warming world. TREE 33 (6): 441-457

Broadhurst, M., Kienzle, M., Stewart, J. (2018). Natural and fishing mortalities affecting eastern sea garfish, Hyporhamphus australis inferred from age-frequency data using hazard functions. Fisheries Research. 198: 43-49

Brown, M.V., van de Kamp., Ostrowski, M., Seymour, J.R., Ingleton, T., Messer, L.F., Jeffries, T., Siboni, N., Laverock, B., Bibiloni-Isaksson, J., Nelson, T.M., Coman, F., Davies, C.H., Frampton, D., Rayner, M., Goossen, K., Rober, S., Homes, B., Abell, G.C.J., Craw, P., Kahlke, T., Li San Sow, S., McAllister, K., Windsor, J., Skuza, M., Crossing, R., Patten, N., Malthouse, P., van Ruth, P.D., Paulsen, I., Fuhrman, J.A., Richardson, A., Koval, J., Bissett, A., Fitzgerald, A., Moltmann, T., Bodrossy, L. (in press, 17/4/2018). Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative. Nature Scientific Data. 16 pp.

Burgess, K.B., Guerrero, M., Marshall, A.D., Richardson, A.J., Bennett, M.B., Couturier, L.I.E. (2018) Novel signature fatty acid profile of the giant manta ray suggests reliance on an uncharacterised mesopelagic food source low in polyunsaturated fatty acids. PLoS One 13(1): e0186464

Burgess, K.B., Guerrero, M., Richardson, A.J., Bennett, M.B., Marshall, A. (2018). Use of epidermal mucus in elasmobranch stable isotope studies: a pilot study using the giant manta ray (Manta birostris). Marine and Freshwater Research 69: 336-342

Couturier, L.I.E., Newman, P., Jaine, F.R.A., Bennett, M.B., Venables, W.N., Cagua, E., Townsend, K.A., Weeks, S.J., Richardson, A.J. (in press, 26/4/2018). Variation in occupancy and habitat use of Manta alfredi at a major aggregation site. Marine Ecology Progress Series

Davies, C., Ajani, P., Armbrecht, L., Atkins, N., Baird, M., Beard, J., Bonham, P., Burford, M., Clementson, L., Coad, P., Crawford, C., Dela-Cruz, J., Doblin, M., Edgar, S., Eriksen, R., Everett, J., Furnas, M., Harrison, D., Hassler, C., Henschke, N., Hoenner, X., Ingelton, T., Jameson, I., Keesing, J., Leterme, S., McLaughlin, M., Miller, M., Moffatt, D., Moss, A., Nayar, S., Patten, N., Patten, R., Pausina, S., Proctor, R., Raes, E., Robb, M., Rothlisberg, P., Saeck, E., Scanes, P., Suthers, I., Swadling, K., Talbot, S., Thompson, P., Thomson, P., Uribe-Palomino, J., van Ruth, P., Waite, A., Wright, S., Richardson, A. (2018). Data Descriptor: A database of chlorophyll a in Australian waters. Scientific Data. 5:180018

Duarte de Paula Costa, M., Mills, M., Richardson, A.J., Fuller, R.A., Muelbert, H., Possingham, H,P.(in press, 10/4/2018). Efficiently enforcing artisanal fisheries to protect estuarine biodiversity. Journal of Applied Ecology.

Ejov, V., Filar, J., Haythorpe, M., Roddick, J., Rossomakhine, S. (2018). A note on using the resistance-distance matrix to solve Hamiltonian cycle problem. Ann Oper Res. 261:393-399

Filar, J., Haythorpe, M., Taylor, R. (2018). Linearly-growing reductions of Karp's 21 NP-complete problems. Numerical Algebra, Control and Optimization. 8(1): 1:16

Holden, M., McDonald-Madden. (2018). Conservation from the grave: Human burials to fund the conservation of threatened species. Conservation Letters, 11(1): 1-4

Kleshnina, M., Filar, J., Ejov, V., McKerral, J. Evolutionary games under incompetence. Journal of Mathematical Biology. 10.1007/s00285-018-1221-2

Leigh, G.M., Hearn, W.S.(2018). Nonparametric tests of double-tagging assumptions. Fisheries Research. 197: 45-49.

McGowan, J., Bode, M., Holden, M.H., Davis, K., Krueck, N.C., Beger, M., Yates, K.L., Possingham, H.P. (2018). Ocean zoning within a sparing versus sharing framework. Theoretical Ecology. [EPub]

Rohner, C.A., Richardson, A.J., Jaine, F.R.A., Bennett, M.B., Weeks, S.J., Cliff, G., Robinson, D., Pierce, S.J. (2018). Satellite tagging highlights the importance of productive Mozambican coastal waters to the ecology and conservation of whale sharks. PeerJ. 1-24 doi: 10.7717/peerj.4161

Tulloch, V., Plaganyi, E., Matear, R., Brown, C., Richardson, A. (2018). Ecosystem modelling to quantify the impact of historical whaling on Southern hemisphere baleen whales. Fish and Fisheries. 19:117-137

Uribe-Palomino, J., Lopez, R., Gibbons, M.J., Gusmao, F., Richardson, A.J. (2018). Siphonophores from surface waters of the Colombian Pacific Ocean. J Marine Biological Association of the United Kingdom. 1-14.

2017

Arief, V., DeLacy, I., Basford, K., Dieters, M. (2017). Application of a dendrogram seriation alogorithm to extract pattern from plant breeding data. Euphytica. 213:85

Bennett, M.B., Coman, F., Townsend, K.T., Couturier, L.I.E., Jaine, F.R.A., Richardson, A.J. (2017). A historical and contemporary consideration of the diet of the reef manta ray, Manta alfredi, from the Great Barrier Reef, Australia. Marine and Freshwater Research. 68:993-997.

Berry, T.E., Osterrieder, S.K., Murray, D.C., Coghlan, M.L., Richardson, A.J., Grealy, A.K., Stat, M., Bejder, L., Bunce, M. (2017).DNA metabarcoding for diet analysis and biodiversity: A case study using the endangered Australian sea lion (Neophoca cinerea). Ecology and Evolution. 7, 5435-5453

Biggs, D., Holden, M., Braczkow, A., Cook, C., Milner-Gulland, E., Phelps, J., Scholes, R., Smith, R., Underwood, F., Adams, V., Allan, J., Brink, H., Cooney, R., Gao, Y., Hutton, J., Macdonald-Madden, E., Maron, M., Redford, K., Sutherland, W., Possingham, H. (2017) Breaking the deadlock on ivory. Science. 358:1378-1381

Blanchard, J., Heneghan, R.H., Everett, J.D., Trebilco, R., Richardson, A.J. (2017). From bacteria to whales: Using functional size spectra to model marine ecosystems. Trends in Ecology & Evolution. 32:3: 174-186

Bogomolov, T., Filar J., Luscombec, R., Nazarathy, Y., Qin, S., Swierkowski, P., Wood, I. (2017). Size does matter: a simulation study on hospital size and operation efficiency.  In The 22nd International Congress on Modelling and Simulation (MODSIM2017) Australia: Modelling and Simulation Society of Australia and New Zealand Inc (MSSANZ). The 22nd International Congress on Modelling and Simulation (MODSIM2017) Tasmania, Australia. Dec 2017, pp1274-1280.

Bohner, M., Dannan, F., Streipert, A. (2018) A nonautonomous Beverton–Holt equation of higher order. Journal of Mathematical Analysis and Applications. 457(1): 114-133

Broadhurst, M., Kienzle, M., Stewart,J. (2018). Natural and fishing mortalities affecting eastern sea garfish, Hyporhamphus australis inferred from age-frequency data using hazard functions. Fisheries Research, 198: 43-49

Brown, C., Jupiter, S., Albert, S., Klein, C., Manqubhai, S., Maina, J., Mumby, P., Olley, J., Stewart-Koster, B., Tulloch, V., Wenger, A. (2017). Tracing the influence of land-use change on water quality and coral reefs using a Bayesian model. Scientific Reports 7(1):4740

Brown, C., Jupiter, S., Lin, H-Y., Albert, S., Klein, C., Maina, J., Tulloch, V., Wenger, A., Mumby, P. (2017). Habitat change mediates the response of coral reef fish populations to terrestrial run-off. Marine Ecology Progress Series. 576:55-68

Burgess, K., Bennett. (2017). Effects of ethanol storage and lipid and urea extraction on δ15N and δ13C isotope ratios in a benthic elasmobranch, the bluespotted maskray Neotrygon kuhlii. Journal of Fish Biology. 90:417-423

Burgess, K.B., Guerrero, M., Marshall, A.D., Richardson, A.J., Bennett, M.B., Couturier, L.I.E. (2018) Novel signature fatty acid profile of the giant manta ray suggests reliance on an uncharacterised mesopelagic food source low in polyunsaturated fatty acids. PLoS One 13(1): e0186464

Burgess, K.B., Guerrero, M., Richardson, A.J., Bennett, M.B., Marshall, A.D. (2017). Use of epidermal mucus in elasmobranch stable isotope studies: a pilot study using the giant manta ray (Manta birostris). Marine and Freshwater Research. doi: 10.1071/MF16355

Diao, J., Nazarathy, Y., Taimre, T., Filar, J. (2017). To fish or cut bait? In The 2017 11th Asian Control Conference (ASCC), Gold Coast Convention Centre, Australia. December 17-20, 2017.

Everett, J., Baird, M.E., Buchanan, P., Bulman, C., Davies, C., Downie, R., Griffiths, C., Henegan, R., Kloser, R., Laiolo, L., Lara-Lopez, A., Lonzana-Montes, H., Matear, R., McEnnulty, F., Robson, B., Rochester, W., Skerratt, J., Smith, J., Strzelecki, J., Suthers, I., Swadling, K., van Ruth, P., Richardson, A. J.(2017). Modeling what we sample and sampling what we model: Challenges for zooplankton model assessment. frontiers in Marine Science. 4(77).

Hardy, N., Berry, T., Kelaher, B., Goldsworthy, S., Bunce, M., Coleman, M., Gillanders, B., Connell, S., Blewitt., M., Figueira, W. (2017). Assessing the trophic ecology of top predators across a recolonisation frontier using DNA metabarcoding of diets. Inter-Research Marine Ecology Progress Series. 573: 237-254

Holden,H., Butt, N., Chauvenet, A., Plein, M., Stringer, M., Chades, I. (2017). Academic conferences urgently need environmental policies. Nature Ecology & Evolution, 1-2 Correspondence paper.

Holden, M., McDonald-Madden, E. (2017). High prices for rare species can drive large populations extinct: the anthropogenic Allee effect revisited. Journal of Theoretical Biology 429: 170-180

Jupiter, S., Wenger, A., Klein, C., Albert, S., Mangubhai, S., Nelson, J., Teneva, L., Tulloch, V., White, A., Watson, J. (2017). Opportunities and constraints for implementing integrated land-sea management on islands. Environmental Conservation. 44(3):254-266.

Kienzle, M., Sterling, D. (2017). Rising temperatures increased recruitment of brown tiger prawn (Penaeus esculentus) in Moreton Bay (Australia). ICES Journal of Marine Science. 74(3):741-749

Law, E.A., Ferraro, P.J., Arcese, P., Bryan, B., Davis, K., Gordon, A., Holden, M, H., Iacona, G., Martinez, R., McAlpine, C., Rhodes, J, R., Sze, J, S., Wilson, K.A. (2017). Projecting the performance of conservation interventions. Biological Conservation 215: 142-151

McGowan, J., Bode, M., Holden, M., Davies, K., Krueck, N., Beger, M., Yates, K., Possingham, H. (2017). Ocean zoning within a sparing versus sharing framework. Theoretical Ecology.

Pascoe, S., Innes, J., Courtney, A., Kienzle, M. (2017). Impact of reducing investment disincentives on the sustainability of the Morten Bay prawn trawl fishery. Fisheries Research. 186:121-130

Powers, R., Coops, N., Tulloch, V., Gergel, S., Nelson, T., Wulder, M. (2017). A conservation assessment of Canda’s boreal forest incorporating alternate climate change scenerios. Remote Sensing in Ecology and Conservation. 3(4):202-216 

Rogers, J., Plaganyi, E., Badcock, R. (2017). Aggregation, Allee effects and critical thresholds for the management of the crown-of-thorns starfish Acanthaster planci Marine Ecology Progress Series 578: 99-114

Rohner, C., Burgess, K., Rambahiniarison, J., Stewart, J., Ponzo, A., Richardson, A. J.(2017). Mobulid rays feed on euphausiids in the Bohol Sea. R. Soc. open sci. 4 161060

Rohner, C.A., Richardson, A.J., Jaine, F.R.A., Bennett, M.B., Weeks, S.J., Cliff, G., Robinson, D., Pierce, S.J. (2018). Satellite tagging highlights the importance of productive Mozambican coastal waters to the ecology and conservation of whale sharks. PeerJ. 1-24 doi: 10.7717/peerj.4161

Saunders, M., Bode, M., Atkinson, S., Klein, C., Metaxas, A., Beher, J, Beger, M., Mills, M., Giakoumi, S., Tulloch, V., Possingham, H. (2017) Simple rules can guide whether land- or ocean-based conservation will best benefit marine ecosystems. PloS Biol. 15(9):e2001886

Simpson, T., Dias, P., Snow, M., Munoz, J., Berry, T. (2017). Real-time PCR detection of Didemnum perlucidum (Monniot, 1983) and Didemnum vexillum (Kott, 2002) in an applied routine marine biosecurity context. Molecular Ecology Resources. 17: 443-453

Stat, M., Huggett, M., Bernasconi, R., Di Battista, J., Berry, T., Newman, S., Harvey, E., Bunce, M. (2017). Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment. Scientific Reports. 7: 12240

Tulloch, V., Plaganyi, E., Matear, R., Brown, C., Richardson, A. (2018). Ecosystem modelling to quantify the impact of historical whaling on Southern hemisphere baleen whales. Fish and Fisheries. 19:117-137

2016

Baniasadi, P., Ejov, V., Filar, J. A. and Haythorpe, M. Genetic theory for cubic graphs. Cham, Switzerland: Springer, 2016. doi:10.1007/978-3-319-19680-0

Bennett, M.B., Coman, F.F., Townsend, K.A., Couturier, L.I.E, Jaine, F.R.A., Richardson, A.J. (2016). A historical and contemporary consideration of the diet of the reef manta ray (Manta alfredi) from the Great Barrier Reef, Australia. Marine and Freshwater Research, 68(5): 993-997

Hallegraeff, G.M., Richardson, A.J. and Coughlan, A. (2016). Marine phytoplankton bioregions in Australian seas. In Handbook of Australasian Biogeography by M Ebach (Ed). CRC/Taylor and Francis Press (in press). 600 pp. ISBN 978148223636

Little, L.R., Kerrigan, B., Thebaud, O., Campbell.A.B., Innes, J., Cameron, D., Mapstone, B.D., Norman-Lopez, A.E., Kung, J.P., Leigh, G.M., O'Neill, M.F., Tobin, A. (2016). Evaluating candidate monitoring strategies, assessment procedures and harvest control rules in the spatially complex Queensland coral reef fin-fish fishery. FRDC Project No 2011/030. Fisheries Research and Development Corporation, p.2014

Richardson, A., J.(2016). How climate change makes me feel. In Phoebe Godfrey and Denise Torres (Ed.), Systemic crises of global climate change: intersections of race, class and gender (pp. 327-327) Abingdon, Oxon, United Kingdom: Routledge. doi:10.4324/9781315737454

Ajani, P., Hallegraeff, G.M., Allen, D., Coughlan, A., Richardson, A.J., Armand, L.K., Ingelton, T., Murray, S.A. (2016). Establishing baselines: a review of eighty years of phytoplankton diversity and biomass in south-eastern Australia. Oceanography and Marine Biology: An Annual Review 54: 387-412.

Armstrong, A.O., Armstrong, A.J., Jaine, F.R.A., Couturier, L.I.E., Fiora, K., Uribe-Palomina, J., Weeks, S.J., Townsend, K.A., Bennett, M.B., Richardson, A.J. (2016). Prey density threshold and tidal influence on reef Manta Ray foraging at an aggregation site on the Great Barrier Reef. PLoS One. 11,5: e0153393 doi:10.1371/journal.pone.0153393

Avrachenkov, K., Eshragh, A. and Filar, J.A.(2016). On transition matrices of Markov chains corresponding to Hamiltonian cycles. Annals of Operations Research.Vol. 243: 19–35.

Avrachenkov, K., Filar, J.A., Gaitsgory, V. and Stillman, A. (2016). Singularly perturbed linear programs and Markov decision processes. Operations Research Letters. 44(3):297-301.

Ben-Tovim, D.I., Filar, J.A., Hakendorf, P.H., Qin, S., Thompson, C. and Ward, D.A. (2016).  Hospital event simulation model: Arrivals to discharge – Design, development and application. Simulation Modelling Practice and theory68; 80-94.

Boland, J., Filar, J.A., Mohammadian, G., & Nazari, A. (2016). Australian electricity market and price volatility, Annals of Operations Research. 241, 1-2: 357–372.

Brown, C.J., O’Connor, M.I., Poloczanska, E.S., Schoeman, D.S., Buckley, L., Burrows, M.I., Duarte, C.M., Halpern, B.A., Pandolfi, J., Parmesan, C., Richardson, A.J. (2016) Ecological and methodological drivers of species' distribution and phenology responses to climate change. Global Change Biology 22: 1548–1560.

Davies, C.H., Coughlan, A., Hallegraeff, G., Ajani, P., Armbrecht, L., Atkins, N., Bonham, P., Brett, S., Brinkman, R., Burford, M., Clementson, L., Coad, P., Coman, F., Davies, D., Dela-cruz, J., Devlin, M., Edgar, S., Eriksen, R., Furnas, M., Hassler, C., Hill, D., Holmes, M., Ingleton, T., Jameson, I., Leterme, S.C., Lønborg, C., McLaughlin, J., McEnnulty, F., McKinnon, A.D., Miller, M., Murray, S., Nayar, S., Patten, R., Pritchard, T., Proctor, R., Purcell-Meyerink, D., Raes, E., Rissik, D., Rubio, A., Ruszczyk, J., Slotwinski, A., Tattersall, K., Thompson, P., Thompson, P., Tonks, M., Trull, T.W., Uribe-Palomino, J., Swadling, K., Waite, A., Yauwenas, R., Zammit, A., Richardson, A.J. (2016) A database of marine phytoplankton abundance, biomass and species composition in Australian waters. Scientific Data 3: 160043. doi:10.1038/sdata.2016.43

Dufois, F., Hardman-Mountford, N.J., Greenwood, J., Richardson, A.J., Feng, M., Matear, R. (2016) Anticyclonic eddies are more productive than cyclonic eddies in subtropical gyres because of winter mixing. Science Advances 2: 6. e1600282. doi: 10.1126/sciadv.1600282.

Garcia-Peña, M. Arciniegas-Alarcón, S., Basford, K.E. and Tadeu dos Santos Dias, C. (2016).  Analysis of sunflower data from a multi-attribute genotype ×environment trial in Brazil. Communications in Biometry and CropScience 11, 2: 127-139.

Hayashi, A., Crombie, A., Lacy, E., Richardson, A.J., Vuong, D., Piggott, A.M. and Hallegraeff, G. (2016). Aspergillus sydowii marine fungal bloom in Australian coastal waters, its metabolites and potential impact on Symbiodinium dinoflagellates. Marine Drugs, 14: 59. doi:10.3390/md14030059

Heneghan, R.F., Everett, J.D., Blanchard, J.L., Richardson, A.J. (2016). Zooplankton are not fish: Improving zooplankton realism in size-based models mediates energy transfer in food webs. Frontiers in Marine Science.3. doi: 10.3389/fmars.2016.00201

Henschke, N., Everett, J.D., Richardson, A.J., Suthers, I.M. (2016) Rethinking the role of salps in the ocean. Trends in Ecology and Evolution. 31,9: 720-733.

Hunt, L.A. and Basford, K.E. (2016). Comparing classical criteria for selecting intra-class correlated features in Multimix. Computational Statistics and Data Analysis 103: 350-366

Jones, A.T., Ovenden, J.R. & Y-G. Wang (2016). Improved Confidence Intervals for the Linkage Disequilibrium Method for Estimating Effective Population Size. Heredity. 117. 4:217-223.

Kerr, N.Z., Baxter, P.W.J., Salguero-Gómez, R., Wardle, G.M. and Buckley, Y.M. (2016). Prioritizing management actions for invasive populations using cost, efficacy, demography and expert opinion for 14 plant species world-wide. Journal of Applied Ecology. 53(2): 305-316.  

McDonald-Madden, E., Sabbadin, R., Game, E.T., Baxter, P.W.J., Chades I.,  & Possingham, H.P. (2016). Using food-web theory to conserve ecosystems. Nature Communications 7:10245, DOI:10.1038/ncomms10245

McGrory, C.A., Pettitt, A.N., Titterington, D.M., Alston, C.L., and Kelly M. (2016). Transdimensional Sequential Monte Carlo using Variational Bayes – SMCVBComputational Statistics and Data Analysis. 93: 246-254, doi:10.1016/j.csda.2015.03.006.

Mokany, K., Ferrier, S., Connolly, S.R., Dunstan, P.K., Fulton, E.A., Harfoot, M.B., Harwood, T.D., Richardson, A, J., Roxburgh, S.H., Scharlemann, J.P.W., Tittensor, D.P., Westcott, D.A., Wintle, B.A. (2016). Integrating modelling of biodiversity composition and ecosystem function. Oikos 125: 10–19.

Ovenden, J.R., Leigh, G.M., Blower, D.C., Jones, A.T., Moore, A., Bustamante, C., Buckworth, R.C., Bennett, M.B., Dudgeon, C.L. (2016). Can estimates of genetic effective population size contribute to fisheries stock assessments? J Fish Biol, 89 (6): 2505-2518.

Poloczanska, E.S., Burrows, M.T., Brown, C.J., Molinos, J.G., Halpern, B., Hoegh-Guldberg, O., Kappel, C., Moore, P., Parmesan, C., Richardson, A.J., Schoeman, D.S., Sydeman, B. (2016). Responses of marine organisms to climate change across ocean regions. Frontiers 3: 62: 21.

Arief, V. DeLacy, I., Dieters, M. and Basford, K. (2016). The value of long-term multi-year multi-location trial data to evaluate risk in prediction of early cultivar performance. Abstracts for International Conference on Quantitative Genetics, 12-17 June 2016, Madison, Wisconsin, USA.

Burgess, K.B., Couturier, L.I.E., Marshall, A.D., Richardson, A.J., Weeks, S.J., Bennett, M.B. (2016). Manta birostris, predator of the deep? Insight into the diet of the giant manta ray using stable isotope analysis. Royal Society Open Science. 3, 11: 160717.

Hunt, L.A. and Basford, K.E. (2016). Model selection for three-mode three-way data. Abstracts for the XXVIIIth International Biometric Conference, 9-15 July, Victoria, British Columbia, Canada. International Biometric Society.

Shewayrga, H., Arief, V.N., Hardner, C.M., DeLacy, I.H. and Basford, K.E. (2016). Spatial analysis for trials with limited replication. Abstracts for Australian Applied Statistical Conference, 28 November – 2 December 2016, Bermagui, New South Wales, Australia. 

2015

Tian, T., McLachlan, G.J., Dieters, M.J. and Basford, K.E. (Dec 2015). Application of multiple imputation for missing values in three-way three-mode multi-environment trial data. PloS One 12 (10), pp15. (doi:10.1371/journal.pone.0144370). 

Ajani P, Hallegraeff GM, Allen D, Coughlan A, Richardson AJ, Armand LK, Ingelton T, Murray SA (Nov 2015) Establishing baselines: a review of eighty years of phytoplankton diversity and biomass in south-eastern Australia.Oceanography and Marine Biology: An Annual Review. ARC rank: A (in press)

Yan Zhou, Liya Fu and Baoxue, Zhang. (2015). Two nonparametric methods for change-point detection in distribution. Communications in Statistics-Theory and Methods (in press)

Mokany K, Ferrier S, Connolly SR, Dunstan PK, Fulton EA, Harfoot MB, Harwood TD, Richardson AJ, Roxburgh SH,Scharlemann JPW, Tittensor DP, Westcott DA, Wintle BA. (Oct 2015). Integrating modelling of biodiversity composition and ecosystem functionOikos. DOI: 10.1111/oik.02792. 1.    

Ceron-Rojas, J.J., Crossa, J., Arief, V.N., Basford, K.E., Rutkoski, J., Jarquín, D., Alvarado, G., Beyene, Y., Semagn, K. and DeLacy, I. (Oct 2015). A genomic selection index applied to simulated and real data.  G3: Genes, Genomes, Genetics 5 (10), 2155-2164. 

Falk, M.G., Alston, C.L., McGrory, C.A., Clifford, S., Heron, E. A., Leonte, D., Moores, M., Walsh, C.D., Pettitt, A. N. and Mengersen, K.L. (Sept 2015). Recent Bayesian Approaches for Spatial Analysis of 2-D Images with Application to Environmental ModellingEnvironmental and Ecological Statistics (EEST). 22 (3): 571-600. DOI 10.1007/s10651-015-0311-1.

Molinos G, Halpern BS, Schoeman DS, Brown CJ, Kiessling W, Moore PJ, Pandolfi JM, Poloczanska ES, Richardson AJ, Burrows MT (Published online 31 Aug 2015) Climate velocity and the future global redistribution of marine biodiversityNature Climate Change.  DOI: 10.1038/NCLIMATE2769. 

Fu C, Large S, Knight B, Shin Y-J, Coll M, Reygondeau G, Boldt, J, Bundy A, Richardson AJ, van der Meeren GI, Torres MA, Sobrino I, Auber A, Travers-Trolet M, Piroddi C, Diallo I, Jouffre D, Lynam C, Shannon LJ (Aug 2015)Relationships among fisheries exploitation, environmental conditions, and ecological indicators.Journal of Marine Systems 148: 101-111. doi:10.1016/j.jmarsys.2015.01.004 1.    

Arief, VN, DeLacy, IH, Crossa, J, Payne, T, Singh, R., Braun, H-J, Tian, T, Basford, KE, Dieters, MJ. (Aug 2015).Evaluating Testing Strategies for Plant Breeding Field Trials: Redesigning a CIMMYT International Wheat Nursery.Crop Science 55, 164-177. 

Thompson PA, Richardson AJ, Bonham P, Thomson P, Rochester W, Doblin MA, Waite AM, Rousseaux C (July 2015)Climate variability drives plankton community composition changes: an El Niño to La Niña transition around Australia.Journal of Plankton Research.37(5): 966-984. http://doi.org/10.1093/plankt/fbv069.

Basford, K.E. (Jun 2015). Using our worldwide networks to promote collaboration.  ATSE Focus 190, 3-4. 

OoiM, Townsend KA, Bennett MB, Richardson AJ, Fernando D, Villa C, Gaus C (May 2015). Levels of arsenic, cadmium, lead and mercury in the branchial plate and muscle tissue of mobulid raysMarine Pollution Bulletin.94(1-2): 251-259. 10.1016/j.marpolbul.2015.02.005.

Rohner CA, Richardson AJ, Prebble CE, Marshall AD, Bennett MB, Weeks SJ, Cliff G, Winter SP, Pierce SJ. (April 2015) Laser photogrammetry improves size and demographic estimates for whale sharksPeerJ. 3:e886https://dx.doi.org/10.7717/peerj.886

Rohner, C.A., Armstrong, A.J., Pierce, S.J., Prebble, C., Cagua, E.F., Cochran, J.E.M., Berumen, M.L., Richardson, A.J. (April 2015) Whale sharks target dense prey patches of sergestid shrimp off TanzaniaJournal of Plankton Research, 37 (2): 352-362. Doi: 10.1093/plankt/fbv010.

Fu, L., Wang, Y-G.,& Zhu, M. (April 2015). A gaussian pseudolikelihood approach  for quantile regression with repeated measurementsComputational Statistics and Data Analysis, 84: 41-53. doi:10.1016/j.csda.2014.11.002.

Weeks, S.J., Magno-Canto, M.M., Jaine, F.R.A., Brodie, J., Richardson, A.J. (March 2015) Unique sequence of events triggers manta ray feeding frenzy in the southern Great Barrier Reef, Australia.  Remote Sensing. 7(3): 3138-3152; doi:10.3390/rs70303138.

Wang, Y-G., Wang, S. &  Dunlop, J. (Jan 2015). Statistical Modeling and Power Analysis for Detecting Trends in Total Suspended Sediment loadsJournal of Hydrology, 520: 439-447. doi:10.1016/j.jhydrol.2014.10.062.

2014

Zhao, YD., Brown, B. and Wang, Y-G (2014). Smoothed Rank-based Procedure for Censored DataElectronic Journal of Statistics. 8(2), 2953-2974. doi:10.1214/14-EJS975.

Wang, N., Wang, Y-G., Courtney, T. & O'Neill, M. (2014). Deriving optimal fishing effort for managing Australia’sMoreton Bay multi-species trawl fishery with aggregated effort data. Accepted by ICES Journal of Marine Science, advance access.

Dufois F, Hardman-Mountford N, Greenwood J, Richardson AJ, Feng M, Herbette S, Matear R (2014). Imprint of eddies on surface chlorophyll in the South Indian OceanJournal of Geophysical Research - Oceans.doi:10.1002/2014JC010164.

Davies, C., Armstrong, A., Baird, M., Coman, F., Gaughan, D., Greenwood, J., Gusmao, F., Henschke, N., Koslow, T.,Leterme, S.C., McKinnon, A.D., Pausina, S., Uribe Palomino, J., Roennfeldt, R-L., Rothlisberg, P., Slotwinski, A.,Strzelecki, J., Suthers, I., Swadling, K., Talbot, S., Tonks, M., Tranter, D., Young, J., & Richardson, A.J. (in press).Over 75 years of zooplankton data in AustraliaEcology. doi:10.1890/14-0697.1

Jaine, F.R.A., Rohner, C.A., Richardson, A.J., Couturier, L.I.E., Weeks, S.J., Bennett, M.B., Townsend, K.A., & Canto, M. (in press). Movements and habitat use of reef manta rays off eastern Australia: offshore excursions, deep diving and eddy affinity revealed by satellite telemetryMarine Ecology Progress Series, 510, 73-86.doi:10.3354/meps10910.

O’Connor, M.I., Holding, J., Kappel, C.V., Duarte, C.M., Brander, K., Brown, C.J., Bruno, J.F., Buckley, L., Burrows, M.T., Halpern, B.S., Kiessling, W., Moore, P., Pandolfi, J.M., Parmesan, C., Poloczanska, E.S., Schoeman, D.S.,Sydeman, W.J., & Richardson, A.J. (in press). Strengthening confidence in climate impacts scienceGlobal Ecology and Biogeography. doi:10.1111/geb.12218. 13 pp.

Arnold, S., Attinger, S., Frank, K., Baxter, P.W.J., Possingham, H.P. & Hildebrandt, A. (in press). Ecosystem management along ephemeral rivers: trading off socio-economic water supply and vegetation conservation under flood regime uncertainty. River Research and Applications. doi:10.1002/rra.2853.

Anderson, D., Byrom, A., Baxter, P., Cassey, P., Ramsey, D. & Woolnough, A. (2014). How can science guide best practice pest management? Kararehe Kino (Vertebrate Pest Research) 24, 26-27.

Xu, J. & Wang, Y-G. (2014). Intra-cluster Correlation Structure in Longitudinal Data Analysis: Selection criteria andMisspecification testsComputational Statistics and Data Analysis, 80, 70-77.  doi:10.1016/j.csda.2014.06.013.

Macbeth, M. & Wang, Y-G. (2014). Rapid assessment of genotype-by-environment interactions and heritability for growth rate in aquaculture species using in vitro fertilisation and DNA tagging. Aquaculture, 434, 397-402.doi:10.1016/j.aquaculture.2014.08.026

Blicharska, M., Baxter, P.W.J. & Mikusiński, G. (2014).  Practical implementation of species recovery plans – lessons from the White-backed Woodpecker Action Plan in SwedenOrnis Fennica 91,108-128.

Ahfock, D., Alston, C.L., Horsley, J. & McGrory, C.A. (2014). Weighted Gibbs Sampler for Mixture Modelling of Massive Datasets via CoresetsSTAT, 3(1), 291-299. doi:10.1002/sta4.62.

Ahfock, D. & McGrory, C.A. (2014). Transdimensional sequential Monte Carlo for hidden Markov models using variational Bayes – SMCVB, Proceedings of the 7th Workshop on Computational Optimization, Federated Conference on Coputer Science and Information Systems (FedCSIS).

Xu, L., Wang, Y-G., Zheng, S. & Shi, N-Z. (2014). Model Selection with Misspecified Spatial Covariance Structure.Journal of Statistical Computation and Simulation. doi:10.1080/00949655.2014.926551.

Hirst, A.G., Keister, J.E., Richardson, A.J., Ward, P., & Escribano, R.V. (2014). Re-assessing copepod growth results from the Moult Rate MethodJournal of Plankton Research, 36(5), 1224-1232. doi:10.1093/plankt/fbu045. 

Gershwin, L., Condie, S., Mansbridge, J.V., & Richardson, A.J. (2014). Dangerous jellyfish blooms are predictable.Journal of the Royal Society Interface, 11(96) doi:10.1098/​rsif.2013.1168.

Lloyd-Jones, L.R., Nguyen, H.D., Wang, Y-G. & O'Neill, M.F. (2014). Improved estimation of size-transition matrices using tag-recapture dataCanadian Journal of Fisheries and Aquatic Sciences, 71(9), 1385-1394. ​doi:10.1139/cjfas-2014-0080.

Lemos, R.T., Wang, Y-G., O'Neill, M.F., Leigh, G.M., & Helmke, S. (2014). East Queensland Grey Mackerel Stock Assessment, DAFF-UQ technical report: 87 pp.

Burrows, M.T., Schoeman, D.S., Richardson, A.J., Molinos, J.G., Hoffmann, A., Buckley, L.B., Moore, P.J., Brown, C.J., Bruno, J.F., Duarte, C.M., Halpern, B.S., Hoegh-Guldberg, O., Kappel, C.V., Kiessling, W., O’Connor, M.I.,Pandolfi, J.M., Parmesan, C., Sydeman, W.J., Ferrier, S., Williams, K.J. & Poloczanska, E.V. (2014). Geographical limits to species-range shifts are suggested by climate velocityNature, 507(7493), 492-495. doi:10.1038/nature12976.

O’Neill, M.F., Leigh, G.M., Wang, Y-G., Braccini, J.M., & Ives, M.C. (2014). Linking spatial stock dynamics and economics: Evaluation of indicators and fishery management for the travelling eastern king prawn (Melicertusplebejus)ICES Journal of Marine Science, 71(7), 1818-1834. doi:10.1093/icesjms/fst218.

Hallegraeff, G., Coman, F., Davies, C., Hayashi, A., McLeod, D., Slotwinski, A., Whittock, L., & Richardson, A.J.(2014). Australian dust storm associated with extensive Aspergillus sydowii fungal “bloom” in coastal waters. Applied and Environmental Microbiology 80(11), 3315-3320. doi:10.1128/AEM.04118-13.

Robinson, L.M., Hobday, A.J., Possingham, H.P., & Richardson, A.J. (2014). Trailing edges projected to move faster than leading edges for large pelagic fish under climate change. Deep Sea Research II: Topical Studies in Oceanography. doi:10.1016/j.dsr2.2014.04.007.

Xin, P., Wang, S., Robinson, C., Li, L., Wang, Y-G. & Barry, D. A. (2014). Memory of past random wave conditions in submarine groundwater dischargeGeophysical Research Letters, 41(7),  2401-2410.doi:10.1002/2014GL059617.

Couturier, L.I.E., Dudgeon, C.L., Pollock, K.H., Jaine, F.R.A., Bennett, M.B., Townsend, K.A., Weeks, S.J. &Richardson, A.J. (2014). Population dynamics of the reef manta ray Manta alfredi in eastern AustraliaCoral Reefs.33(2), 329-342. doi:10.1007/s00338-014-1126-5.

Raitsos, D.E., Pradhan, Y., Lavender, S.J., Hoteit, I., McQuatters-Gollop, A., Reid, P.C., & Richardson, A.J. (2014).From silk to satellite: half a century of ocean colour changes in the Northeast AtlanticGlobal Change Biology 20(7), 2117-2123. doi:10.1111/gcb.12457.

Henschke, N., Everett, J.D., Doblin, M.A., Pitt, K.A., & Richardson, A.J., Suthers, I.M., (2014). Demography andinterannual variability of salp swarms (Thalia democratica). Marine Biology 161(1), 149-163. doi:10.1007/s00227-013-2325-2.

Hoegh-Guldberg, O., Cai, R., Poloczanska, E.S., Brewer, P.G., Sundby, S., Hilmi, K., Fabry, V.J. Jung, S. and 21 contributing authors including Richardson, A.J. (2014). Chapter 30: The Ocean. In: Climate Change 2014: Impacts, Adaptation, and Vulnerability. Part B: Regional Aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change [Barros, V.R., Field, C.B., Dokken, D.J.,Mastrandrea, M.D., Mach, K.J., Bilir, T.E., Chatterjee, M., Ebi, K.L., Estrada, Y.O., Genova, R.C., Girma, B., Kissel, E.S., Levy, A.N., MacCracken, S., Mastrandrea, P.R. & White, L.L. (eds.)]. Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, pp. 1655-1731.

Lynch TP, Morello EB, Evans K, Richardson AJ, Steinberg CR, Roughan M, Thompson P, Middleton JF, Feng M,Sherrington R, Brando V, Tilbrook B, Ridgway K, Allen S, Doherty P, Hill K, Moltmann TC (2012). IMOS National Reference Stations: a continental scaled physical, chemical and biological coastal observing systemPLoS ONE.doi:10.1371/journal.pone.0113652.

2013

Foo, C. & Wang, Y-G. (2013). Stochastic growth models for analyzing crustacean data. In Piantadosi, J., Anderssen, R.S. and Boland J. (eds) MODSIM2013, 20th International Congress on Modelling and Simulation. Modelling and Simulation Society of Australia and New Zealand, 566-572. ISBN: 978-0-9872143-3-1.

Wang, Y-G. & Tian, T. (2013). Sediment concentration prediction and statistical evaluation for annual load estimationJournal of Hydrology, 482, 69–78. doi:10.1016/j.jhydrol.2012.12.043.

Lloyd-Jones, L.R., Wang, Y-G., Nash, W.J., (2013).Generalised growth models for aquatic species with an application to blacklip abalone (Haliotis rubra)Ecological Modelling, 272, 311-322.doi:10.1016/j.ecolmodel.2013.10.012.

Wang, Y-G. & Wang, Na. (2013) Rejoinder to Pascoe et al (2013)’s comment paperFisheries, 38 (11), 509-510.doi:10.1080/03632415.2013.848346.

Couturier , L.I.E., Rohner, C.A., Richardson, A.J., Marshall, A.D., Jaine, F.R.A., Bennett, M.B., Townsend, K.A., Weeks, S.J. &  Nichols, P.D. (2013) Stable isotope and signature fatty acid analyses show reef manta rays snack on surface zooplankton and feast on demersal zooplanktonPLoS One 8(10), e77152. 15 pp.doi:10.1371/journal.pone.0077152.

Hoegh-Guldberg O, Poloczanska E, Richardson A (2013). Four Degrees of Global Warming: Australia in a Hot World. Australia’s marine resources in a warm, acid oceanpublished by Routledge Taylor and Francis Group.

Brown, C.J., Saunders, M.I., Possingham, H.P. & Richardson, A.J. (2013), Interactions between global and local ecosystem stresses determine effectiveness of cumulative impact mappingDiversity and Distributions20(5), 538-546. doi:10.1111/ddi.12159.

Parmesan, C., Burrows, M.T., Duarte, C.M., Poloczanska, E.S., Richardson, A.J., Schoeman, D.S. & Singer, M.C. (2013), Beyond climate change attribution in conservation and ecological researchEcology Letters16 SI, 58-71.doi:10.1111/ele.12098.

Ponce-Reyes, R., Nicholson, E., Baxter, P.W.J., Fuller, R.A. & Possingham, H. (2013) Extinction risk in cloud forest fragments under climate change and habitat lossDiversity and Distributions,19(5-6) SI, 518-529.doi:10.1111/ddi.12064.

Macbeth, G.M., Broderick, D., Buckworth, R.C. & Ovenden, J.R. (2013) Linkage Disequilibrium Estimation of Effective Population Size with Immigrants from Divergent Populations: A Case Study on Spanish Mackerel (Scomberomorus commerson)G33(4), 709-717. doi:10.1534/g3.112.005124.

Mazor, T., Levin, N., Possingham, H.P., Lvey, Y., Rocchini, D., Richardson, A.J. & Kark, S. (2013). Can satellite-based night lights be used for conservation? The case of nesting sea turtles in the MediterraneanBiological Conservation, 159, 63-72. doi:10.1016/j.biocon.2012.11.004.

Catry, P., Lemos, R.T., Brickle, P., Phillips, R.A., Matias, R., & Granadeiro, J.P. (2013). Predicting the distribution of a threatened albatross: the importance of competition, fisheries and annual variability.Progress in Oceanography, 110, 1-10. doi:10.1016/j.pocean.2013.01.005.

Gusmão, L.F.M., McKinnon, A.D. & Richardson, A.J. (2013), Female-biased sex ratios in marine pelagic copepods: Response to Hirst et al.(2013), Marine Ecology Progress Series, 489, 299–301. doi:10.3354/meps10523.

Rohner, C.A., Couturier, L.I.E., Richardson, A.J., Pierce, S.J., Prebble, C., Gibbons, M.J. & Nichols, P.D. (2013), Diet of whale sharks Rhincodon typus inferred from stomach content and signature fatty acid analyses.Marine Ecology Progress Series493219-235. doi:10.3354/meps10500.

Rohner, C.A., Pierce, S.J., Marshall, A.D., Weeks, S.J., Bennett, M.B. & Richardson, A.J. (2013), Trends in sightings and environmental influences on a coastal aggregation of manta rays and whale sharks.Marine Ecology Progress Series, 482, 153-168. doi:10.3354/meps10290.

Gusmão, L.F.M., McKinnon, A.D. & Richardson, A.J. (2013), No evidence of predation causing female-biased sex ratios in marine pelagic copepodsMarine Ecology Progress Series,482: 279-298. doi:10.3354/meps10265.

Gershwin, L-A., Richardson, A.J., Winkel, K.D., Fenner, P.J., Lippmann, J., Hore, R., Avila-Soria, G., Brewer, D.,Kloser, R., Steven, A.& Condie, S. (2013) Biology and ecology of Irukandji jellyfish (Cnidaria: Cubozoa). Advances in Marine Biology66,1-86. doi:10.1016/B978-0-12-408096-6.00001-8.

Ceccarelli, D., McKinnon, D.A., Adrefouet, S., Alain, V., Young, J., Gledhill, D., Flynn, A., Bax, N., Beaman, R., Borsa, P., Brinkman, R., Bustamante, R., Campbell, R., Cappo, M., Cravatte, S., D’Agata, S., Dichmont, C., Dunstan, P.K.,Dupouy, C., Edgar, G., Farman, R., Furnas, M., Garrigue, C., Hutton, T., Kulbick, M., Letourneur, Y., Lindsay, D.,Menkes, C., Mouillot, D., Parravicini, V., Payri, C., Pelletier, B., Richer de Forges, B., Ridgway, K., Rodier, M., Samadi, S., Schoeman, D., Skewes, T., Swearer, S., Vigliola, L., Wantiez, L., Williams, A., Williams, A. & Richardson, A.J.(2013) The Coral Sea: Physical environment, ecosystem status and biodiversity assetsAdvances in Marine Biology,66, 211-287. doi:10.1016/B978-0-12-408096-6.00004-3.

Gren, I-M., Baxter, P.W.J., Mikusiński, G. & Possingham, H.P. (2013). Cost-effective biodiversity restoration with uncertain growth in forest habitat qualityJournal of Forest Economics., 20(1), 77-92.doi:10.1016/j.jfe.2013.09.003.

Couturier, L.I.E., Rohner, C.A., Richardson, A.J., Pierce, S.J., Marshall, A.D., Jaine, F.R.A., Townsend, K.A., Bennett, M.B., Weeks, S.J. & Nichols, P.D. (2013). Unusually high levels of omega-6 polyunsaturated fatty acids in whale sharks and manta raysLipids, 48(10), 1029-1034. doi:10.1007/s11745-013-3829-8.

Couturier, L.I.E., Bennett, M.B. & Richardson, A.J. (May 2013), Mystery of giant rays off the Gaza strip solved.Oryx, 47(4), 480. doi: http://dx.doi.org/10.1017/S0030605313000793.

Gibbons, M.J. & Richardson AJ (2013), Beyond the jellyfish joyride and global oscillations: advancing jellyfish researchJournal of Plankton Research, 35(5), 929-938. doi:10.1093/plankt/fbt063. ARC rank: C

McKinnon, D.A., Campbell, R., Ceccarelli, D., Dugan, S., Dunstan, P., Lindsay, D., Ridgway, K., Williams, A. &Richardson, A.J. (2013) Tropical Marginal Seas: Priority Regions For Managing Threats To Marine Biodiversity And Ecosystem Function.  Annual Reviews in Marine Science, 6, 17.1-17.23. doi: 10.1146/annurev-marine-010213-135042.

Brown, C.J., Saunders, M.I., Possingham, H.P. & Richardson, A.J. (2013), Managing for interactions between local and global stressors of ecosystemsPLoS One. 8(6), 1-10. doi:10.1371/journal.pone.0065765.

Poloczanska, E.S., Brown, C.J., Sydeman, W.J., Kiessling, W., Moore, P.J., Brander, K., Bruno, J.F., Buckley, L., Burrows, M.T., Duarte, C.M., Halpern, B.S., Holding, J., Kappel, C.V., O’Connor, M.I., Pandolfi, J.M., Parmesan, C.,Schoeman, D.S., Schwing, F., Thompson, S.A. & Richardson, A.J. (2013). Global imprint of climate change on marine lifeNature Climate Change, 3(10), 919-925. doi:10.1038/NCLIMATE1958.

Wang, Y-G.(2013). Water Quality: Indicators, Human Impact and Environmental Health, edited by Y-G Wang, bookISBN: 978-1-62417-111-6, Nova Science Publishers.

Wang, Y-G. (2013). Book Review of "Generalized Estimating Equations" by A. Ziegler, Australian & New Zealand Journal of Statistics, 55(1), 61. doi:10.1111/anzs.12017.

2012

Burrows, M.T., Schoeman, D.S., Duarte, C.M., O’Connor, M.I., Buckley, L.B., Kappel, C.V., Parmesan, C., Halpern, B.S., Brown, C., Brander, K.M., Bruno, J.F., Pandolfi, J.M., Sydeman, W.J., Richardson, A.J. & Poloczanska, E.S. (2012).  Response to "Invasive Species Unchecked by Climate Response"Science335(6068), 538-539.doi:10.1126/science.335.6068.538-a.

Zhang, Q., Li, L., Wang, Y-G., Werner, A. D., Xin, P., Jiang, T. & Barry, D. A. (2012). Has the Three-Gorges Dammade the Poyang Lake wetlands wetter and drier?  Geophysical Research Lettersdoi:10.1029/2012GL053431, 39,L20402. doi:10.1029/2012GL053431.

Brewer, D.T., Morello, E.B., Griffiths, S., Fry, G., Heales, D., Apte, S.C., Venables, W.N., Rothlisberg, P.C., Moeseneder, C., Lansdell, M., Pendrey, R., Coman, F., Strzelecki, J., Jarolimek, C.V., Jung, R.F. & Richardson, A.J. (2012)Impacts of gold mine waste disposal on a tropical pelagic ecosystemMarine Pollution Bulletin, 64 (12), 2790-2806.doi:10.1016/j.marpolbul.2012.09.009.

Young, Jock W.; McKinnon, A. David; Ceccarelli, Daniela; Brinkman, Richard; Bustamante, Rodrigo H.; Cappo, Mike;Dichmont, Cathy; Doherty, Peter; Furnas, Miles; Gledhill, Daniel; Griffiths, Shane; Hutton, Trevor; Ridgway, Ken; Smith, David; Skewes, Tim; Williams, Alan; Richardson, Anthony J. (2012). Workshop on the ecosystem and fisheries of the Coral Sea: an Australian perspective on research and managementReviews in Fish Biology and Fisheries, 22(3), 827-834. doi:10.1007/s11160-011-9251-5.

Shin, Yunne-Jai; Bundy, Alida; Shannon, Lynne J.; Blanchard, Julia L.; Chuenpagdee, Ratana; Coll, Marta; Knight, Ben; Lynam, Christopher; Piet, Gerjan; Richardson, Anthony J. (2012). Global in scope and regionally rich: anIndiSeas workshop helps shape the future of marine ecosystem indicatorsReviews in Fish Biology and Fisheries,22(3), 835-845. doi:10.1007/s11160-012-9252-z.

Jaine, F.R.A., Couturier, L.I.E., Weeks, S.J., Townsend, K.A., Bennett, M.B., Fiora, K. & Richardson, A.J. (2012)When giants turn up: Sighting trends, environmental influences and habitat use of the manta ray Manta alfredi at a coral reefPLoS ONE, 7(10). doi: 10.1371/journal.pone.0046170.

Wang, Y-G. & Wang, N. (2012). A Retrospective Evaluation of Sustainable Yields for Australia’s Northern Prawn FisheryFisheries, 37(9), 410-416. doi:10.1080/03632415.2012.714326.

Dobbie, M. J., Wang, Y-G., Zammit, R., Offer, A., Negus, P., & Blessing, J. (2012). Optimising the sampling effort in riparian surveysEnvironmental Monitoring and Assessment, 185(5), 3721-3733. doi:10.1007/s10661-012-2823-6. B

Beltrán, F., Sansó, B., Lemos, R. T., & Mendelssohn, R. (2012). Joint projections of North Pacific sea surface temperature from different global climate modelsEnvironmetrics (Special Issue: Advances in Statistical Methods for Climate Analysis), 23(5) SI, 451–465. doi:10.1002/env.2150.

Lloyd-Jones, L.R., Wang,Y-G., Courtney, A.J., Prosser, A. J. & Montgomery, S.S. (2012). Latitudinal and seasonal effects on growth of the Australian eastern king prawn (Melicertus plebejus)Canadian Journal of Fisheries and Aquatic Sciences, 69(9), 1525–1538. doi:10.1139/F2012-072.

Fu, L., Wang, Y-G & Liu, C.J. (2012). Rank regression for analysing ordinal qualitative data for treatment comparisonPhytopathology, 102(11), 1064-1070. doi:10.1094/PHYTO-05-11-0128.

Richardson, A.J., Brown C.J,Brander, K., Bruno, J.F., Buckley, L., Burrows, M.T., Duarte, C.M., Halpern, B.S., Hoegh-Guldberg, Holding, J.,  Kappel, C.V., Kiessling, W., Moore, P., O’Connor, M.I., Pandolfi, J.M., Parmesan, C., Schoeman, D.S., Schwing, F., Sydeman, W.J., Poloczanska, E.S. (2012) Climate change and marine lifeBiology Letters, 8(6), 907-909. doi: 10.1098/rsbl.2012.0530.

Couturier, L.I.E., Marshall, A.D., Jaine, F.R.A., Kashiwagi, T., Pierce, S.J., Townsend, K.A., Weeks, S.J., Bennett, M.B., Richardson, A.J. (2012). Biology, ecology and conservation of the MobulidaeJournal of Fish Biology, 80(5) SI, 1075-1119. doi:10.1111/j.1095-8649.2012.03264.x.

McLeod, D.J., Hallegraeff, G.M., Hosie, G.W., Richardson, A. J. (2012). Climate-driven range expansion of the red-tide dinoflagellate Noctiluca scintillans into the Southern OceanJournal of Plankton Research, 34(4), 332-337.doi:10.1093/plankt/fbr112. 

Flynn, B. A.; Richardson, A. J.; Brierley, A. S.; Boyer, D. C.; Axelsen, B. E.; Scott, L.; Moroff, N. E.; Kainge, P. I.;Tjizoo, B. M.; Gibbons, M. J. (2012). Temporal and spatial patterns in the abundance of jellyfish in the northernBenguela upwelling ecosystem and their link to thwarted pelagic fishery recoveryAfrican Journal of Marine Science,34(1), 131-146. doi:10.2989/1814232X.2012.675122.

Griffith, G., Fulton, B., Gorton, B., & Richardson, A.J. (2012). Predicting interactions among fishing, ocean warming, and ocean acidification in a marine system with whole-ecosystem modelsConservation Biology, 26(6), 1145-1152. doi:10.1111/j.1523-1739.2012.01937.x.

Fan, S.K., Lu Y. & Wang, Y-G. (2012). A Simple Bayesian Decision-Theoretic Design for Dose Finding Trials,Statistics in Medicine, 31 (28), 3719-3730. doi:10.1002/sim.5438.

Wang, Y-G. & Wang N. (2012) Implications of Gain Functions in Fisheries ManagementReviews in Fisheries Science, 20(2), 103-109. doi:10.1080/10641262.2012.663421.

Fu, L. & Wang, Y-G. (2012).  Statistical Tools for Analyzing Water Quality Data,  Kostas Voudouris and DimitraVoutsa (eds), Water Quality Monitoring and Assessment, Chapter 6, 143-168. doi:10.5772/35228. (InTech - free access)

Boyce, M.S., Baxter, P.W.J. & Possingham, H.P. (2012) Managing moose harvests by the seat of your pants,Theoretical Population Biology, 82(4) SI, 340-347. doi:10.1016/j.tpb.2012.03.002. 

Fu, L. & Wang, Y-G. (2012). Quantile regression for longitudinal data with a working correlation model,Computational Statistics and Data Analysis, 56(8), 2526-2538. doi:10.1016/j.csda.2012.02.005. 

Fu, L. & Wang, Y-G. (2012). Efficient estimation for rank-based regression with clustered dataBiometrics, 68 (4),1074 - 1082. doi:10.1111/j.1541-0420.2012.01760.x.

Mackas, D.L., Greve, W., Edwards, M., Chiba, S., Tadokoro, K., Eloire, D., Mazzocchi, M.G., Batten, S., Richardson, A.J., Johnson, C., Head, E., Converssi, A. & Peluso, T. (2012). Changing zooplankton seasonality in a changing ocean: Comparing time series of zooplankton phenologyProgress In Oceanograpahy, 97 SI, 31-62.doi:10.1016/j.pocean.2011.11.005.

2011

Brown, C.J., Fulton, B.A., Possingham, H.P & Richardson, A.J. (2011). How long can fisheries managers afford to delay action on ecosystem and climate change?Ecological Applications, 22(1), 298-310. doi:10.1890/11-0419.1.

Brown, C.J., Schoeman, D., Sydeman, W, Poloczanska, E.S., Moore, P., Venables, W., Burrows, M., Pandolfi, J., Buckley, L., Duarte C.M, Brander K. & Richardson A.J. (2011). Quantitive approaches in climate change ecology,Global Change Biology, 17(12), 3697-3713. doi:10.1111/j.1365-2486.2011.02531.x.

Burrows, M.T., Schoeman, D.S., Buckley, L.B., Moore, P., Poloczanska, E.S., Brander, K.M., Brown C., Bruno, J.F., Duarte, C.M., Halpern, B.S., Holding, J., Kappel, C.V., Kiessling, W., O’Connor, M.I., Pandolfi, J.M., Parmesan, C.,Schwing, F.B., Sydeman, W.J.  & Richardson, A.J. (2011). The pace of shifting climate in marine and terrestrial systemsScience, 334(6056), 652-655. doi:10.1126/science.1210288.

Carey, V.J. & Wang, Y-G. (2011). Working covariance model selection for generalized estimating equations,Statistics in Medicine, 30(26), 3117-3124. doi:10.1002/sim.4300.

Couturier, L., Jaine, F.R.A., Townsend, K., Weeks, S., Richardson, A.J. & Bennett, M.B. (2011). Distribution, site affinity and regional movements of the manta ray, Manta alfredi, along the east coast of AustraliaMarine and Freshwater Research, 62(6), 628-637. doi:10.1071/MF10148.

Fu, L. & Wang, Y-G. (2011). Nonparametric Rank Regression for Analyzing Water Quality Concentration Data with Multiple Detection LimitsEnvironmental Science and Technology, 45(4),1481-1489. doi:10.1021/es101304h.

Garcia-March, J.R., Marquez-Aliaga A., Wang, Y-G., Surge, D. & Kersting D.K. (2011). Study of Pinna nobilis grow the from inner record: How biased are posterior adductor muscle scars estimates?Journal of Experimental Marine Biology and Ecology, 407(2), 337-344. doi:10.1016/j.jembe.2011.07.016.

Grantham, H.S., Game, E.T., Lombard, A.T., Hobday, A.J., Richardson, A.J., Beckley, L.E., Pressey, R.L., Huggett, J.A., Coetzee, J.C., van der Lingen, C.D., Petersen, S.L., Merkle, D. & Possingham, H.P. (2011). Accommodating Dynamic Oceanographic Processes and Pelagic Biodiversity in Marine Conservation Planning, PLoS ONE, 6(2),e16552. doi:10.1371/journal.pone.0016552.

Griffith, G.P., Fulton, E.A. & Richardson, A.J. (2011). Effects of fishing and acidification-related benthic mortality on the southeast Australian marine ecosystemGlobal Change Biology17(10), 3058-3074. doi:10.1111/j.1365-2486.2011.02453.x.

Parmesan, C., Duarte, C.M., Poloczanska, E.S., Richardson, A.J. & Singer, M.C. (2011). Overstretching Attribution,Nature Climate Change1(1), 2-4. doi:10.1038/nclimate1056.

Johnson, C.R., Banks, S.C., Barrett, N.S., Cazzasus, F., Dunstan, P.K., Edgar, G.J., Frusher, S.D., Gardner, C.,Helidoniotis, F., Hill, K.L., Holbrook, N.J., Hosie, G.W., Last, P.R., Ling, S.C., Melbourne-Thomas, J., Miller, K., Pecl, G.T., Richardson, A.J., Ridgway, K.R., Rintoul, S.R., Ritz, D.A., Ross, D.J., Sanderson, J.C., Shepherd, S., SlotwinskiA., Swadling K.M. & Taw, N. (2011). Climate change cascades: shifts in oceanography, species’ ranges and marine community dynamics in eastern TasmaniaJournal of Marine Experimental Biology and Ecology400(1-2) SI, 17-32. doi:10.1016/j.jembe.2011.02.032.

Macbeth, G.M. & Palmer, P.J. (2011). A novel breeding program for improved growth in barramundi Lates calcarifer(Bloch) using foundation stock from progeny-tested parents , Aquaculture, 318, 325-334.

Percival, D., Lennox, S., Wang, Y-G. & Darnell, R. (2011). Wavelet-Based Multiresolution Analysis of Wivenhoe Dam Water Temperatures,  Water Resources Research47, W05552. doi:10.1029/2010WR009657.

Poloczanska, E.S., Smith, S., Fauconnet, L., Healy, J., Tibbetts, I., Burrows, M.T. & Richardson, A.J. (2011). Little change in distribution of rocky shore faunal communities on the Australian east coast after 50 years of warming,Journal of Experimental Marine Biology and Ecology, 400(1-2) SI, 145-154. doi:10.1016/j.jembe.2011.02.018.

Probert, W.J.M., Drechsler, M., Baxter, P.W.J. & Possingham, H.P. (2011). Resource allocation in two species systems: Is it worth acknowledging species interactions? Ecological Modelling, 222(10), 1781-1789.doi:10.1016/j.ecolmodel.2011.02.026.

Robinson, L., Hobday, A.J., Pearson, R.G., Elith, J., Kendall, B.E., Possingham, H.P. & Richardson, A.J. (2011).Pushing the limits in marine species distribution modelling: lessons from the land present challenges and opportunitiesGlobal Ecology and Biogeography, 20(6), 789-802. doi:10.1111/j.1466-8238.2010.00636.x.

Roger, L.M., McKinnon, A.D., Knott, B., Matear, R., Scadding, C. & Richardson, A.J. (2011). Comparison of shell structure of two tropical thecosomata (Creseis acria and Diacavolinia longirostris) from 1963-2009: potential implications of declining aragonite saturation stateICES Journal of Marine Science69(3), 465-474.doi:10.1093/icesjms/fsr171.

Rohner, C.A., Richardson, A.J., Marshall, A.D., Weeks, S.J. & Pierce, S.J. (2011). How large is the world’s largest fish? Measuring whale sharks Rhincodon typus with laser photogrammetryJournal of Fish Biology 78(1), 378-385. doi:10.1111/j.1095-8649.2010.02861.x.

Wang, Y-G. & Fu, L. (2011). Rank regression for the accelerated failure time model with clustered and censored dataComputational Statistics and Data Analysis, 55(7), 2334-2343. doi:10.1016/j.csda.2011.01.023.

Wang, Y-G., Keuhnert, P. & Henderson, B. (2011).  Load estimation with uncertainties from opportunistic sampling data - A semiparametric approach,  Journal of Hydrology, 396(1-2), 148-157. doi:10.1016/j.jhydrol.2010.11.003.

2010

Breitung, J.,  Chaganty, N.R., Daniel, R.M., Kenward, M.G., et al (inc Wang, Y-G.) (2010).  Discussion of "generalized estimating equations: Notes on the choice of the working correlation matrix"Methods of Information in Medicine, 49(5), 426-432.

Liu et al. (inc Wang Y-G.) (2010). Plant Height Affects Fusarium Crown Rot Severity in WheatPhytopathology,100(12), 1276-1281. doi:10.1094/PHYTO.05.10.0142.

Wang, Y-G. & Fu, L. (2010).  Rank Regression Analysis of Correlated Water Quality Data from South East QueenslandEnvironmental and Ecological Statistics, 18(4), 781-793. doi:10.1007/s10651-010-0165-5.

Mokany, K., Richardson, A.J., Poloczanska, E.S., Ferrier, S., (2010). Uniting marine and terrestrial modelling ofboidiversity under climate changeTrends in Ecology & Evolution, 25(10) SI, 550-551.doi:10.1016/j.tree.2010.06.014.